Biothings

Author: bcte

August undefined, 2024

http://docs.biothings.io/ WebBackground info on TRAPI 1.4 provenance expectations in #604 most of the TRAPI KP "ingestion" is covered in #614 Overview Text-Mining KP and some Multiomics KPs We will expect Text-Mining KP and so...

New API based on MyChem chembl.drug_mechanisms data #100

WebA npm workspace setup for local development environment with all biothings explorer nodejs packages Shell 0 Apache-2.0 6 0 1 Updated Apr 6, 2024. mygeneset.info-website … WebThey were built using BioThings SDK and follow the same design pattern of our official BioThings APIs (MyGene.info, MyVariant.info, MyChem.info, etc). These APIs are … kroger pharmacy dexter rd cordova tn

Introduction — BioThings SDK documentation

WebThe query engine we developed for MyGene.info can be easily adapted to provide the high-performance and flexible query interface for programmatic access. MyGene.info follows the same spirit, but for gene annotations. It currently serves ~3M request per month. User contributions of variant annotations WebDec 20, 2024 · Example of current MyChem structure vs association-based structure Background. ANG1005 (CHEMBL1089636) has two drug-mechanisms that are different categories: BINDING AGENT for Prolow-density lipoprotein receptor-related protein 1 (chembl target CHEMBL4630884 aka Q07954); INHIBITOR for tubulin (chembl target … map of indian burial grounds in texas

BioThings SDK: a toolkit for building high-performance data APIs …

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WebJan 16, 2024 · BioThings API provides three components in its API development ecosystem. First, it provides a family of high-performance APIs for accessing up-to-date … WebOct 19, 2024 · The BioThings APIs are a collection of high-performance, scalable, annotation as a service APIs that automate the integration of biological annotations from … map of indian casinos in oregonWebIntroduction¶ What’s BioThings?¶ We use “BioThings” to refer to objects of any biomedical entity-type represented in the biological knowledge space, such as genes, genetic … map of indiana with major cities

"Webbiothings.web¶. Generate a customized BioThings API given a supported database. biothings.web.launcher: Launch web applications in different environments. … " - Biothings

Biothings

WebDesigned, implemented, deployed and maintained publicly accessible and updated Biothings API web services dedicated to biological research (10 to 100 million hits/month, 100 million to 2 billion ... WebBioThings Studio is a pre-configured, ready-to-use application. At its core is BioThings Hub, the backend service behind all BioThings APIs. 1.1. BioThings Hub: the backend service Hub is responsible for maintaining data up-to-date, and creating data releases for the BioThings frontend.

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WebIn each node of message.knowledge_graph.nodes, there is a name property that is used by the ARAX UI as a human-readable label. I believe BTE populates that field using the SRI Node Normalization se... WebOct 18, 2024 · BioThings SDK includes a data source management console which helps to handle data source monitoring and download scheduling (tasks important for keeping …

WebFor any given “ BioThings ” type, BioThings SDK helps developers to aggregate annotations from multiple data sources, and expose them as a clean and high … WebOct 3, 2024 · BioThings SDK Quick Summary. BioThings SDK provides a Python-based toolkit to build high-performance data APIs (or web services) from a single data source or …

WebBioThings Standalone This step-by-step guide shows how to use Biothings standalone instances. Standalone instances are based on Docker containers and provide a fully pre-configured, ready-to-use Biothings API that can easily be maintained and kept up-to-date. WebJan 10, 2024 · The BioThings SDK has been used to build over 50 APIs which collectively includes and exposes over 1.7 billion records (Supplementary Table S1). The SDK is …

WebBioThings Taxonomy API1.0OAS3. BioThings Taxonomy API. Documentation of the BioThings taxonomy query web services. Learn more about t.biothings.io.

WebBioThings SDK uses MongoDB as the “staging” storage backend for JSON objects before they are sent to Elasticsearch for indexing. You must a have working MongoDB instance you can connect to. We’ll also perform some basic commands. You also have to install the latest stable BioThings SDK release, with pip from PyPI: pip install biothings map of indian camps in alabamaWebMay 21, 2024 · The development of the BioThings SDK will have three phases: Phase 1- Abstraction--in this phase, we will extract the common codebase from MyGene and MyVariant to form the three core components (“databuild”, “web-API” and “cloud-deployment”) of the BioThings SDK. kroger pharmacy diamond causewayWebAlternatively, we can look at the NER score provided by Semmeddb in the PREDICATION_AUX table (as suggested in analysis of semmeddb using pubtator results biothings/BioThings_Explorer_TRAPI#501 (comment)) map of indian canyonsWebFrom an architecture perspective, biothings.web.query is one of the data services, built on top of the biothings.web.connections layer, however, due to the complexity of the module, it is escalated one level in organization to simplify the overall folder structure. The features are available in biothings.web.services.query namespace via import. map of indian casinos in californiaWebBioThings Explorer is the "Google Maps" for biologists. It utilizes SmartAPI Specifications to build a network of APIs. And by traversing through the network, BioThings Explorer could help user identify potential paths … map of indian casinos in northern californiaWebDemotests will be broken on dev until it is able to use the new TRAPI 1.4 format, see this PR: biothings/biothings_explorer#612 map of indian citiesWebBioThings Studio is a pre-configured, ready-to-use software. At its core is BioThings Hub, the backend system behind all BioThings API. Step-by-step tutorial http://docs.biothings.io/en/latest/doc/studio.html Stable releases map of indian casinos in south dakota